Publications
Publications PEPR MoleculArXiv
23 documents
Articles dans une revue
- Greta Charlotte Dahm, Usman Akhtar, Alix Bouvier-Müller, Laura Lim, Fabienne Levi-Acobas, et al.. Probing three-dimensional cyclooctatetraene for nucleobase modification in aptamer selection. Communications Chemistry, 2025, 8 (1), pp.276. ⟨10.1038/s42004-025-01629-5⟩. ⟨pasteur-05262586⟩
- Pierre Nicolas Bizat, Nazarii Sabat, Marcel Hollenstein. Recent advances in biocatalytic and chemoenzymatic synthesis of oligonucleotides. ChemBioChem, 2025, 26 (9), pp.e202400987. ⟨10.1002/cbic.202400987⟩. ⟨pasteur-05119218⟩
- Rémi Sieskind, Sophia Missoury, Clément Madru, Isciane Commenge, Germain Niogret, et al.. Crystal structures of monomeric BsmI restriction endonuclease reveal coordinated sequential cleavage of two DNA strands. Communications Biology, 2025, 8 (1), pp.387. ⟨10.1038/S42003-025-07612-Z⟩. ⟨pasteur-04986492⟩
- Maria Nerantzaki, Claire Husser, Isaure Sergent, Laurence Charles, Jean-François Lutz, et al.. Chemical Synthesis and Poly(ethylene glycol)-Like Conjugation of the Mango-II Fluorogenic RNA Aptamer. Bioconjugate Chemistry, 2025, 36 (3), pp.449-456. ⟨10.1021/acs.bioconjchem.4c00540⟩. ⟨hal-05078762⟩
- Chloé Berton, Gouenou Coatrieux, Héléne Gasnier, Sahar Haddad, Reda Bellafqira, et al.. A Dynamic Sliding Window Encoding for Secured DNA Data Storage Compliant With Biological and Indexing Constraints. IEEE Access, 2025, 13, pp.66009-66030. ⟨10.1109/ACCESS.2025.3560387⟩. ⟨hal-05067257⟩
- Alexandros Petropoulos, Laurence Charles, Jean‐michel Becht, Michael Schmitt, Jacques Lalevée, et al.. Photo‐Accelerated Synthesis of Oligo(triazole amide)s. Macromolecular Rapid Communications, In press, Online ahead of print. ⟨10.1002/marc.202400759⟩. ⟨hal-04798416⟩
- Nazarii Sabat, Andreas Stämpfli, Steven Hanlon, Serena Bisagni, Filippo Sladojevich, et al.. Template-dependent DNA ligation for the synthesis of modified oligonucleotides. Nature Communications, 2024, 15 (1), pp.8009. ⟨10.1038/s41467-024-52141-8⟩. ⟨pasteur-04956998v2⟩
- Germain Niogret, Camille Chériaux, Frédéric Bonhomme, Fabienne Levi-Acobas, Carlotta Figliola, et al.. A toolbox for enzymatic modification of nucleic acids with photosensitizers for photodynamic therapy. RSC Chemical Biology, 2024, 5, pp.841-852. ⟨10.1039/d4cb00103f⟩. ⟨hal-04653532v2⟩
- Julien Leblanc, Olivier Boulle, Emeline Roux, Jacques Nicolas, Dominique Lavenier, et al.. Fully in vitro iterative construction of a 24 kb-long artificial DNA sequence to store digital information. Biotechniques, 2024, 76 (5), pp.203-215. ⟨10.2144/btn-2023-0109⟩. ⟨hal-04567229⟩
- Nazarii Sabat, Andreas Stämpfli, Marie Flamme, Steven Hanlon, Serena Bisagni, et al.. Artificial nucleotide codons for enzymatic DNA synthesis. Chemical Communications, 2023, 59 (98), pp.14547-14550. ⟨10.1039/d3cc04933g⟩. ⟨pasteur-04452276⟩
- Germain Niogret, Pascal Röthlisberger, Fabienne Levi-Acobas, Frédéric Bonhomme, Gilles Gasser, et al.. Facilitated Synthetic Access to Boronic Acid-Modified Nucleoside Triphosphates and Compatibility with Enzymatic DNA Synthesis. SYNLETT, 2023, 35 (06), pp.677-683. ⟨10.1055/a-2212-7704⟩. ⟨pasteur-04614013⟩
- Germain Niogret, Alix Bouvier-Müller, Chiara Figazzolo, Jack M Joyce, Frédéric Bonhomme, et al.. Interrogating aptamer chemical space through modified nucleotide substitution facilitated by enzymatic DNA synthesis. ChemBioChem, 2023, 25 (1), pp.e202300539. ⟨10.1002/cbic.202300539⟩. ⟨hal-04248298⟩
- Belaid Hamoum, Elsa Dupraz. Channel Model and Decoder With Memory for DNA Data Storage With Nanopore Sequencing. IEEE Access, 2023, 11, pp.52075-52087. ⟨10.1109/ACCESS.2023.3278975⟩. ⟨hal-04184188v2⟩
Communications dans un congrès
- Sara Al Sayyed, Aline Roumy, Thomas Maugey, Nicolas Lobato-Dauzier, Anthony J Genot. Compact image representation for content-based image retrieval in DNA data storage. PCS 2025 - Picture Coding Symposium, Dec 2025, Aachen, Germany. pp.1-5. ⟨hal-05322329⟩
- Sara Al Sayyed, Aline Roumy, Thomas Maugey. Efficient Constraining of Transcoding in DNA-Based Image Storage. ICIP 2025 - IEEE International Conference on Image Processing, Sep 2025, Anchorage (AK), USA, United States. pp.1-6. ⟨hal-05300068⟩
- Claire Couvreur, Michela Testolina, Théo Ladune, Pierrick Philippe, Marc Antonini. Comparaison de différents codecs pour la compression d'image sur ADN synthétique. GRETSI’25 - XXXe Colloque Francophone de Traitement du Signal et des Images, Aug 2025, Strasbourg, France. ⟨hal-05269745⟩
- Davi Nachtigall Lazzarotto, Michela Testolina, Serge Kas Hanna, Osamu Watanabe, Eva Gil San Antonio, et al.. Overview of JPEG DNA coding system for image storage on synthetic DNA. Applications of Digital Image Processing XLVIII, Aug 2025, San Diego, France. pp.27, ⟨10.1117/12.3068093⟩. ⟨hal-05330969⟩
- Xavier Pic, Raja Appuswamy. COMBINING PROGRESSIVE IMAGE COMPRESSION AND RANDOM ACCESS IN DNA DATA STORAGE. DSP 2025, 25th International Conference on Digital Signal Processing, IEEE, Jun 2025, Costa Navarino, Greece. ⟨hal-05066885⟩
- Jeremy Mateos, Dominique Lavenier, Melpomeni Dimopoulou, Anthony Genot, Marc Antonini. Primer design for DNA storage random access. CORESA 2024 - 23ème conférence sur COmpression et REprésentation des Signaux Audiovisuels, Nov 2024, Rennes, France. pp.1-3. ⟨hal-04739300⟩
- Belaïd Hamoum, Aref Ezzeddine, Elsa Dupraz. Synchronization Algorithms from High-Rate LDPC Codes for DNA Data Storage. DSP 2023: 24th International Conference on Digital Signal Processing, Jun 2023, Rhodes, Greece. pp.1-5, ⟨10.1109/DSP58604.2023.10167916⟩. ⟨hal-04183975⟩
Chapitres d'ouvrage
- Guillaume Gines, Anthony J Genot, Yannick Rondelez. Parallel Computations with DNA-Encoded Chemical Reaction Networks. Visions of DNA Nanotechnology at 40 for the Next 40, Springer Nature Singapore, pp.349-369, 2023, Natural Computing Series, ⟨10.1007/978-981-19-9891-1_19⟩. ⟨hal-04287184⟩
Pré-publications, Documents de travail
- Julien Leblanc, Olivier Boulle, Emeline Roux, Nicolas Jacques, Dominique Lavenier, et al.. In vitro construction and long read sequencing analysis of a 24 kb long artificial DNA sequence encoding the Universal Declaration of the Rights of Man and of the Citizen. 2023. ⟨hal-04357386⟩
Rapports
- Yaël Grosjean, Dominique Rumeau, Anne-Karine Bouzier-Sore, Marie Chabbert, Olivier Croce, et al.. RAPPORT DE PROSPECTIVE CSI INSB INSTITUT DES SCIENCES BIOLOGIQUES. CSI INSB INSTITUT DES SCIENCES BIOLOGIQUES. 2023. ⟨hal-04284459⟩
Documents récupérés de l'archive ouverte HAL 